Run preparation and diagnostics
===============================

Check prepared runs and inspect stored results, provenance, and comparison
reports. These helpers do not launch a simulation.

.. currentmodule:: soda_analyzer

.. autosummary::
   :toctree: generated
   :nosignatures:

   format_nebscape_setup_conversion_report
   format_soda_run_check_report
   check_soda_run_folder
   format_soda_run_command_suggestion
   suggest_soda_run_command
   format_ezga_setup_conversion_report
   check_nebscape_minhop_history_equivalence
   summarize_nebscape_minhop_rejections
   summarize_nebscape_minhop_run_modes
   summarize_nebscape_minhop_finalization_timing
   summarize_nebscape_workflow_progress
   summarize_nebscape_hpc_acceptance
   format_nebscape_hpc_acceptance_report
   compare_nebscape_optimize_only_native_outputs
   format_nebscape_optimize_only_native_comparison_report
   compare_nebscape_native_downstream_outputs
   format_nebscape_native_downstream_comparison_report
   summarize_nebscape_fairchem_runtime
   format_nebscape_fairchem_runtime_report
   summarize_nebscape_fairchem_soda_config
   compare_nebscape_fairchem_config_runtime
   summarize_nebscape_fairchem_hdf5_numeric_sanity
   format_nebscape_fairchem_hdf5_numeric_sanity_report
   compare_nebscape_fairchem_native_outputs
   format_nebscape_fairchem_native_comparison_report
   summarize_nebscape_geometry_pair_preparation_logs
   check_duplicate_states
   check_duplicate_processes
   check_ape_cluster_member_distances
   analyze_process_product_states
   summarize_descriptor_sampling_flags
   summarize_descriptor_registry_provenance
   format_duplicate_state_report
   format_duplicate_process_report
   format_ape_cluster_member_distance_report
   format_process_product_state_report
   format_descriptor_sampling_flags_report
   format_descriptor_registry_provenance_report