get_accepted_minhop_structures¶
- nebscape_lib_class.get_accepted_minhop_structures(molecule_id=None, molecule_ids=None, reaction_id=None, target_kind=None, target_id=None, parent_structure_id=None, run_mode=None, active_only=True, accepted_for_pairing_only=True, require_intact=False, require_converged=False)¶
Return raw accepted-history structures for hopping audits.
- Parameters:
molecule_id (int, optional) – Restrict structures to targets containing this molecule;
Noneapplies no molecule filter. Default:None.molecule_ids (int or str or sequence of int, optional) – Require every listed molecule to occur in the target. Strings accept comma- or space-separated IDs; combined with
molecule_idwhen both are supplied. Default:None.reaction_id (int, optional) – Reaction identifier; in structure queries, match its associated target context.
Noneleaves the reaction unrestricted. Default:None.target_kind (str or int, optional) – Target kind:
molecule(isolated adsorbate),reaction_side(combined side), or a stored code.Noneincludes all target kinds. Default:None.target_id (int, optional) – Identifier within the selected target kind;
Noneleaves it unrestricted. Default:None.parent_structure_id (int, optional) – Input or parent structure identifier;
Noneincludes all parents. Default:None.run_mode (str or int, optional) – MinHop run mode,
"search"or"optimize_only"(or its stored code);Noneincludes both. Default:None.active_only (bool, optional) – Keep only accepted-history rows whose active flag is true. Default:
True.accepted_for_pairing_only (bool, optional) – Filter the recorded search-time pairing flag. This flag is not post-finalization endpoint eligibility. Default:
True.require_intact (bool, optional) – Additionally require the stored MinHop intact flag to be true. Default:
False.require_converged (bool, optional) – Additionally require the stored MinHop convergence flag to be true. Default:
False.
- Returns:
list of nebscape_structure_class – Structures referenced by matching accepted-history entries; an empty list if no entries match.
Notes
Selection follows the accepted-history table, excluding rejected candidates. By default, inactive or superseded entries and entries whose search-time pairing flag is false are omitted. Raw search flags are not applicable, so requiring intactness/convergence excludes them. Use
get_finalized_minhop_structuresfor the endpoint population available downstream, including preparation seeds.See also
nebscape_lib_class.get_minhop_result_structuresInspect all persisted MinHop candidates.
nebscape_lib_class.get_minhop_accepted_minimaInspect acceptance metadata, including inactive history.
Examples
>>> minima = db.nebscape.get_accepted_minhop_structures(reaction_id=0) >>> images = [minimum.atoms for minimum in minima]